2012

Omics analysis of low dose acetaminophen intake demonstrates novel response pathways in humans., Jetten MJ, Gaj S, Ruiz-Aracama A, de Kok TM, van Delft JH, Lommen A, van Someren EP, Jennen DG, Claessen SM, Peijnenburg AA, Stierum RH, Kleinjans JC., Toxicol Appl Pharmacol. 2012 Mar 15;259(3):320-8. Epub 2012 Jan 20.
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Link:http://www.sciencedirect.com/science/article/pii/S0041008X12000208

Biofluid metabonomics using (1)H NMR spectroscopy: the road to biomarker discovery in gastroenterology and hepatology., Patel NR, McPhail MJ, Shariff MI, Keun HC, Taylor-Robinson SD., Expert Rev Gastroenterol Hepatol. 2012 Apr;6(2):239-51. Review.
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Link: http://www.expert-reviews.com/doi/abs/10.1586/egh.12.1?url_ver=Z39.88-2003&rfr_id=ori:rid:crossref.org&rfr_dat=cr_pub%3dpubmed

Intra- and interlaboratory reproducibility of ultra performance liquid chromatography-time-of-flight mass spectrometry for urinary metabolic profiling., Benton HP, Want E, Keun HC, Amberg A, Plumb RS, Goldfain-Blanc F, Walther B, Reily MD, Lindon JC, Holmes E, Nicholson JK, Ebbels TM., Anal Chem. 2012 Mar 6;84(5):2424-32. Epub 2012 Feb 13.
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Link: http://pubs.acs.org/doi/abs/10.1021/ac203200x

Plasma Cytokine Concentrations in Workers Exposed to 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD)., Saberi Hosnijeh F, Boers D, Portengen L, Bueno-de-Mesquita HB, Heederik D, Vermeulen R., Front Oncol. 2012;2:37. Epub 2012 Apr 11.
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Link: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3356043/?tool=pubmed

Planning and monitoring of patients for electrical cardioversion for atrial fibrillation., Deuling JH, Vermeulen RP, Smit MD, van der Maaten JM, Boersema HM, van den Heuvel AF, Van Gelder IC.
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Link: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3303022/?tool=pubmed

STrengthening the Reporting of OBservational studies in Epidemiology--Molecular Epidemiology (STROBE-ME): an extension of the STROBE statement., Gallo V, Egger M, McCormack V, Farmer PB, Ioannidis JP, Kirsch-Volders M, Matullo G, Phillips DH, Schoket B, Stromberg U, Vermeulen R, Wild C, Porta M, Vineis P., Mutagenesis. 2012 Jan;27(1):17-29. Epub 2011 Oct 25. Erratum in: Mutagenesis. 2012 May;27(3):383.
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Link: http://mutage.oxfordjournals.org/content/27/1/17.long

STrengthening the Reporting of OBservational studies in Epidemiology - Molecular Epidemiology (STROBE-ME): an extension of the STROBE statement., Gallo V, Egger M, McCormack V, Farmer PB, Ioannidis JP, Kirsch-Volders M, Matullo G, Phillips DH, Schoket B, Stromberg U, Vermeulen R, Wild C, Porta M, Vineis P., Eur J Clin Invest. 2012 Jan;42(1):1-16. doi: 10.1111/j.1365-2362.2011.02561.x. Epub 2011 Oct 25. Erratum in: Eur J Clin Invest. 2012 Apr;42(4):462.
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Link: http://www.ncbi.nlm.nih.gov/pubmed/22023344

Recommendations and proposed guidelines for assessing the cumulative evidence on joint effects of genes and environments on cancer occurrence in humans., Boffetta P, Winn DM, Ioannidis JP, Thomas DC, Little J, Davey Smith G, Cogliano VJ, Hecht SS, Seminara D, Vineis P, Khoury MJ., Int J Epidemiol. 2012 May 16. [Epub ahead of print]
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Link: http://ije.oxfordjournals.org/content/early/2012/05/16/ije.dys010.long

Causal diagrams in systems epidemiology., Joffe M, Gambhir M, Chadeau-Hyam M, Vineis P., Emerg Themes Epidemiol. 2012 Mar 19;9(1):1. [Epub ahead of print]
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Link: http://www.ete-online.com/content/9/1/1/abstract

Intragenic ATM methylation in peripheral blood DNA as a biomarker of breast cancer risk., Brennan K, Garcia-Closas M, Orr N, Fletcher O, Jones M, Ashworth A, Swerdlow A, Thorne H; KConFab Investigators, Riboli E, Vineis P, Dorronsoro M, Clavel-Chapelon F, Panico S, Onland-Moret NC, Trichopoulos D, Kaaks R, Khaw KT, Brown R, Flanagan JM., Cancer Res.
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Link: http://cancerres.aacrjournals.org/content/72/9/2304.long

2011

Whole-genome gene expression modifications associated with nitrosamine exposure and micronucleus frequency in human blood cells., Hebels DG, Jennen DG, van Herwijnen MH, Moonen EJ, Pedersen M, Knudsen, Kleinjans JC, de Kok TM. Mutagenesis. 2011 Nov;26(6):753-61. Epub 2011 Jul 1.
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Link to article: http://mutage.oxfordjournals.org/content/26/6/753.long

Deregulation of cancer-related pathways in primary hepatocytes derived from DNA repair-deficient Xpa-/-p53+/- mice upon exposure to benzo[a]pyrene., van Kesteren PC, Zwart PE, Pennings JL, Gottschalk WH, Kleinjans JC, van Delft JH, van Steeg H, Luijten M. Toxicol Sci. 2011 Sep;123(1):123-32. Epub 2011 Jun 29.
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Link to article: http://toxsci.oxfordjournals.org/content/123/1/123.long

Integrating transcriptomics and metabonomics to unravel modes-of-action of 2,3,7,8-tetrachlorodibenzo-p-dioxin (TCDD) in HepG2 cells., Jennen D, Ruiz-Aracama A, Magkoufopoulou C, Peijnenburg A, Lommen A, van Delft J, Kleinjans J. BMC Syst Biol. 2011 Aug 31;5:139.
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Link to article: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3231768/?tool=pubmed


Integrated pathway-level analysis of transcriptomics and metabolomics data with IMPaLA., Kamburov A, Cavill R, Ebbels TM, Herwig R, Keun HC., Bioinformatics. 2011 Oct 15;27(20):2917-8. Epub 2011 Sep 4.
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Link to article: http://bioinformatics.oxfordjournals.org/content/27/20/2917.long


Metabolomics and human nutrition ., Primrose S, Draper J, Elsom R, Kirkpatrick V, Mathers JC, Seal C, Beckmann M, Haldar S, Beattie JH, Lodge JK, Jenab M, Keun H, Scalbert A., Br J Nutr. 2011 Apr;105(8):1277-83. Epub 2011 Jan 24.
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Link to article: http://journals.cambridge.org/action/displayAbstract?fromPage=online&aid=8234617


Meeting-in-the-middle using metabolic profiling - a strategy for the identification of intermediate biomarkers in cohort studies., Chadeau-Hyam M, Athersuch TJ, Keun HC, De Iorio M, Ebbels TM, Jenab M, Sacerdote C, Bruce SJ, Holmes E, Vineis P. Biomarkers. 2011 Feb;16(1):83-8. Epub 2010 Nov 29.
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Link to article: http://informahealthcare.com/doi/abs/10.3109/1354750X.2010.533285

Nuclear magnetic resonance (NMR)-based metabolomics., Keun HC, Athersuch TJ. Methods Mol Biol. 2011;708:321-34.
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Link to article: http://www.springerlink.com/content/k428426p9v81l221/?MUD=MP


Global gene expression profiling of a population exposed to a range of benzene levels., McHale CM, Zhang L, Lan Q, Vermeulen R, Li G, Hubbard AE, Porter KE, Thomas R, Portier CJ, Shen M, Rappaport SM, Yin S, Smith MT, Rothman N. Environ Health Perspect. 2011 May;119(5):628-34. Epub 2010 Dec 13.
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Link to article: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3094412/?tool=pubmed


DNA methylation changes associated with cancer risk factors and blood levels of vitamin metabolites in a prospective study., Vineis P, Chuang SC, Vaissière T, Cuenin C, Ricceri F; Genair-EPIC Collaborators, Johansson M, Ueland P, Brennan P, Herceg Z., Epigenetics. 2011 Feb;6(2):195-201. Epub 2011 Feb 1.
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Link to article: http://www.landesbioscience.com/journals/epigenetics/article/13573/?nocache=232350007


Integrating biomarkers into molecular epidemiological studies., Vineis P, Chadeau-Hyam M., Curr Opin Oncol. 2011 Jan;23(1):100-5. Review.
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Link to article: http://pt.wkhealth.com/pt/re/lwwgateway/landingpage.htm;jsessionid=PvfJShv9CtLhnhMGLThGb6p37GJRLmZgjrLzKnnkyTqWphTc0NMn!1226420425!181195629!8091!-1?issn=1040-8746&volume=23&issue=1&spage=100


Genome-wide association studies may be misinterpreted: genes versus heritability., Vineis P, E Pearce N., Carcinogenesis. 2011 Sep;32(9):1295-8. Epub 2011 May 11. Review.
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Link to article: http://carcin.oxfordjournals.org/content/32/9/1295.long

Methylation patterns in sentinel genes in peripheral blood cells of heavy smokers: Influence of cruciferous vegetables in an intervention study., Scoccianti C, Ricceri F, Ferrari P, Cuenin C, Sacerdote C, Polidoro S, Jenab M, Hainaut P, Vineis P, Herceg Z., Epigenetics. 2011 Sep 1;6(9). [Epub ahead of print]
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Link to article: http://www.landesbioscience.com/journals/epigenetics/article/16515/?nocache=962932699

Assessing causal relationships in genomics: From Bradford-Hill criteria to complex gene-environment interactions and directed acyclic graphs., Geneletti S, Gallo V, Porta M, Khoury MJ, Vineis P., Emerg Themes Epidemiol. 2011 Jun 9;8(1):5.
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Link to article: http://www.ncbi.nlm.nih.gov/pmc/articles/PMC3141807/?tool=pubmed